******Results of the Case-control Association tests ****** There are 180 individuals from 60 independent families. 71 of the individuals are affected, 109 of the individuals are unaffected, and 0 of the individuals are of unknown phenotype. The prevalence value used in the MQLS calculations is 0.050000 **************************************** Analysis of Marker 1 **************************************** There are 71 affected individuals, 109 unaffected individuals, and 0 individuals of unknown phenotype available. ***************************************** MQLS test using robust variance estimate MQLS statistic value = 1.183767 pvalue = 0.27659 df = 1 ***************************************** Case-control corrected chi-squared test using robust variance estimate Corrected chi-squared statistic value = 1.183767 pvalue = 0.27659 df = 1 ***************************************** WQLS test using robust variance estimate WQLS statistic value = 0.595872 pvalue = 0.440157 df = 1 ***************************************** allele frequency estimates using the Best Linear Unbiased Estimator (BLUE) in cases controls all sample allele 1 : freq = 0.2010 sd = 0.0410 freq = 0.2422 sd = 0.0363 freq = 0.2222 sd = 0.0310 allele 2 : freq = 0.7990 sd = 0.0410 freq = 0.7578 sd = 0.0363 freq = 0.7778 sd = 0.0310 ***************************************** allele frequency estimates using naive counting in cases controls all sample allele 1 : freq = 0.1901 freq = 0.2431 freq = 0.2222 allele 2 : freq = 0.8099 freq = 0.7569 freq = 0.7778 *****************************************